Stem-loop sequence aae-mir-2c

Accession

MI0013514 (change log)

Description

Aedes aegypti miR-2c stem-loop

Gene family

MIPF0000049; mir-2

Literature search

3 open access papers mention aae-mir-2c
(5 sentences)

Stem-loop

   u      -g       u        uu   uacgaccu 
5'  gcguug  caucaaa uugguugu  uag        c
    ||||||  ||||||| ||||||||  |||        u
3'  cgcaac  guaguuu gaccgaca  auc        u
   a      ga       c        cu   cccaaagu 

Deep sequencing

51874 reads, 2.55e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AaegL1): supercont1.268: 889085-889162 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aae-mir-2c

• aae-mir-71: supercont1.268: 889378-889454 [-]
• aae-mir-2c: supercont1.268: 889085-889162 [-]
• aae-mir-13: supercont1.268: 888736-888819 [-]
• aae-mir-2a: supercont1.268: 888581-888677 [-]
• aae-mir-2b: supercont1.268: 887244-887330 [-]

Database links

• miRBase Tracker:MI0013514

Mature sequence aae-miR-2c

• Accession: MIMAT0014308
• Sequence: 50 - uaucacagccagcuuugaugagc - 72
• Deep sequencing: 51848 reads, 2 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).