miRBase entry: gra-MIR482

Stem-loop gra-MIR482


Accession
MI0013536
Description
Gossypium raimondii gra-MIR482 precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
5 open access papers mention gra-MIR482
(105 sentences)

Sequence

gaaggaggaaaaggagagaccguuucuggaaauuuucggaauggaggaguuggaaagauuuugaauuuucucuguauuuuaauaaugaaaaaUCUUUCCAAUUCCUCCCAUUCCacugauuuccagcacuuccucuccauuuucuuaccuuu
((((((((((((((((((...((..(((((((((...(((((((((((((((((((((((((..(((................)))..)))))))))))))))))).)))))))...))))))))).))...)))))).))))))).)))))

Structure
     -       -      acc  uu         uuc       -                  ga   uucucug 
gaagg aggaaaa ggagag   gu  cuggaaauu   ggaaugg aggaguuggaaagauuuu  auu       u
||||| ||||||| ||||||   ||  |||||||||   ||||||| ||||||||||||||||||  |||        
uuucc uucuuuu ccucuc   ca  gaccuuuag   CCUUACC UCCUUAACCUUUCUaaaa  uaa       a
     a       a      cuu  -c         uca       C                  ag   uaauuuu 


Annotation confidence Not enough data
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Genome context
chr9: 37350782-37350933 [+]

Database links

Mature gra-miR482

Accession MIMAT0014329
Description Gossypium raimondii gra-miR482 mature miRNA
Sequence 93 - UCUUUCCAAUUCCUCCCAUUCC - 114
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19889219
    Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
    Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
    Genome Biol (2009) 10:R122