Stem-loop ghr-MIR393

Accession

MI0013541

Description

Gossypium hirsutum ghr-MIR393 precursor miRNA

Gene family

MIPF0000083; MIR393

Literature search

15 open access papers mention ghr-MIR393
(48 sentences)

Sequence

gguggagagcUCCAAAGGGAUCGCAUUGAUCUaauguugaugaugggcuuccuugaaaaccuuaacgaauuaauuauugauuuuuguugauucaguucaguacccauuggaucaugcgaucccuucggaauuuuccauc
(((((((((.(((.((((((((((((.(((((((((....(((.((..(((...)))..)).....((((((((...........))))))))...))).....))))))))))))))))))))).))).)))))))))

Structure

         c   A            U         -uuga   ugggcuuccuugaaaaccuuaac        uauu 
gguggagag UCC AAGGGAUCGCAU GAUCUaaug     uga                       gaauuaau    g
||||||||| ||| |||||||||||| |||||||||     |||                       ||||||||    a
cuaccuuuu agg uucccuagcgua cuagguuac     acu                       cuuaguug    u
         a   c            -         ccaug   --------------------uga        uuuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR393

• Accession: MIMAT0014334
• Description: Gossypium hirsutum ghr-miR393 mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUCU - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122