miRBase entry: ghr-MIR394a

Stem-loop ghr-MIR394a


Accession
MI0013543
Description
Gossypium hirsutum ghr-MIR394a precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
14 open access papers mention ghr-MIR394a
(31 sentences)

Sequence

ugcuuucauggggguuuagcaaagggcuucuuacagaguuuaUUGGCAUUCUGUCCACCUCCccaucauggaaaaaguccguauuuuuccccucugguuuuucauggaggugggcauacugccaacugugcucuguuggcuucucuuuguaaaauccuugugaugca
(((..((((((((((((.((((((((...((.(((((((.((((((((...((((((((((((((....(((((((.......)))))))....)))........)))))))))))...)))))).)).))))))).))...)))))))).)))))))))))).)))

Structure
   uu            a        cuu  u       u  -      UUC           --------   ucau       gu 
ugc  ucauggggguuu gcaaaggg   cu acagagu ua UUGGCA   UGUCCACCUCC        cca    ggaaaaa  c
|||  |||||||||||| ||||||||   || ||||||| || ||||||   |||||||||||        |||    |||||||  c
acg  aguguuccuaaa uguuucuc   gg ugucucg gu aaccgu   acggguggagg        ggu    ccuuuuu  g
   -u            a        uuc  u       u  c      cau           uacuuuuu   cucc       au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ghr-miR394a

Accession MIMAT0014336
Description Gossypium hirsutum ghr-miR394a mature miRNA
Sequence 43 - UUGGCAUUCUGUCCACCUCC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19889219
    Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
    Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
    Genome Biol (2009) 10:R122