miRBase entry: tgu-mir-1805

Stem-loop tgu-mir-1805


Accession
MI0013639
Description
Taeniopygia guttata tgu-mir-1805 precursor miRNA
Gene family
MIPF0000947; mir-1805


Sequence

guggaauauucugggAGUUGUAGUCUUUCAAACAGAgcuucacaaggacauaccUGUAUUGGAACACUACAGCUcccugaacuuccuc
..((((..(((.((((((((((((.((((((((((...(((....))).....)))).)))))).)))))))))))).))).))))..

Structure
gu    ua   u            C      -    --Agc   a 
  ggaa  uuc gggAGUUGUAGU UUUCAA ACAG     uuc c
  ||||  ||| |||||||||||| |||||| ||||     |||  
  ccuu  aag cccUCGACAUCA AAGGUU UGUc     agg a
cu    -c   u            C      A    cauac   a 


Annotation confidence Not enough data
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Genome context
chr1: 32735542-32735629 [+]

Database links

Mature tgu-miR-1805-5p

Accession MIMAT0014620
Description Taeniopygia guttata tgu-miR-1805-5p mature miRNA
Sequence 16 - AGUUGUAGUCUUUCAAACAGA - 36
Evidence experimental
Illumina [1-2]

Mature tgu-miR-1805-3p

Accession MIMAT0014453
Description Taeniopygia guttata tgu-miR-1805-3p mature miRNA
Sequence 55 - UGUAUUGGAACACUACAGCU - 74
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727