miRBase entry: tgu-mir-1784

Stem-loop tgu-mir-1784


Accession
MI0013644
Description
Taeniopygia guttata tgu-mir-1784 precursor miRNA
Gene family
MIPF0001873; mir-1784


Sequence

ugauuucuuggggcccaaUUCUGCUCUUAUUGAAAUCAGUgagaguccugccauUGACUUAAAUGGGAGCAGAAUUgggaccuaagaggaca
....((((((((.((((((((((((((((((....((((((..........))))))....)))))))))))))))))).))))))))....

Structure
ugau        g                  GAAA      agag 
    uucuuggg cccaaUUCUGCUCUUAUU    UCAGUg    u
    |||||||| ||||||||||||||||||    ||||||     
    gagaaucc gggUUAAGACGAGGGUAA    AGUuac    c
acag        a                  AUUC      cguc 


Annotation confidence Not enough data
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Genome context
chr3: 31872434-31872525 [-]

Database links

Mature tgu-miR-1784-3p

Accession MIMAT0014457
Description Taeniopygia guttata tgu-miR-1784-3p mature miRNA
Sequence 55 - UGACUUAAAUGGGAGCAGAAUU - 76
Evidence experimental
Illumina [1-2]

Mature tgu-miR-1784-5p

Accession MIMAT0026960
Description Taeniopygia guttata tgu-miR-1784-5p mature miRNA
Sequence 19 - UUCUGCUCUUAUUGAAAUCAGU - 40
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727