miRBase entry: tgu-mir-2960

Stem-loop tgu-mir-2960


Accession
MI0013647
Description
Taeniopygia guttata tgu-mir-2960 precursor miRNA


Sequence

ggccagagcgguggagguggaggcagcggcgggucuccuccuccccucccagcuccuggAGGCGACUCGGCUGCCUGCAGcucccucucucucc
((..((((.((.((((.((.(((((((..((((((.(((((................))))).))))))))))))).)).))))))))))..))

Structure
  cc    c  u    g  g       gg      u     uccccuc 
gg  agag gg ggag ug aggcagc  cggguc ccucc       c
||  |||| || |||| || |||||||  |||||| |||||        
cc  ucuc uc ccuc AC UCCGUCG  GCUCAG GGAgg       c
  uc    -  -    G  G       --      C     uccucga 


Annotation confidence Not enough data
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Genome context
chr3: 39458890-39458983 [-]

Database links

Mature tgu-miR-2960

Accession MIMAT0014460
Description Taeniopygia guttata tgu-miR-2960 mature miRNA
Sequence 60 - AGGCGACUCGGCUGCCUGCAG - 80
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727