miRBase entry: tgu-mir-2961

Stem-loop tgu-mir-2961


Accession
MI0013648
Description
Taeniopygia guttata tgu-mir-2961 precursor miRNA


Sequence

cccgggccccgcccgccgccuccccgucgcccuuccccggccgcucgcggaccgggAGGAAGGUAGGGCGGGCGUCGCUcccccacgggcucggcgcucgcgcgccuuccccccgggcgcgugccccuaaggggaaggggcuccguggcggugcgaggcggcggcggucccggg
((((((..(((((.((((((((((((((((((((((((((..((.((((..(((((.(((((((.(.((((((((((..(((....)))..)))))))))).)))))))).))))).)))).)).))...)))))))))......)))))).).))))))))))))).))))))

Structure
      cc     c        - -      ------         ---  cc  u    ga     A       A G          CU   c 
cccggg  ccgcc gccgccuc c ccgucg      cccuucccc   gg  gc cgcg  ccggg GGAAGGU G GCGGGCGUCG  ccc c
||||||  ||||| |||||||| | ||||||      |||||||||   ||  || ||||  ||||| ||||||| | ||||||||||  |||  
gggccc  ggcgg cggcggag g ggcggu      gggaagggg   cc  cg gcgc  ggccc ccuuccg c cgcucgcggc  ggg a
      -u     -        c u      gccucg         aau  -c  u    -g     c       - g          uc   c 


Annotation confidence Not enough data
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Genome context
chrUn: 173940744-173940917 [-]

Database links

Mature tgu-miR-2961

Accession MIMAT0014461
Description Taeniopygia guttata tgu-miR-2961 mature miRNA
Sequence 57 - AGGAAGGUAGGGCGGGCGUCGCU - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762