miRBase entry: tgu-mir-2188

Stem-loop tgu-mir-2188


Accession
MI0013666
Description
Taeniopygia guttata tgu-mir-2188 precursor miRNA
Gene family
MIPF0000812; mir-2188


Sequence

gagguuagauggcacuuugggguuuccuucugaggaauaucagaccugugggaAAGGUCCAACCUCACAUGUCCUguauagaauaaagagggAUAUAUGUGGUCAGACCUAUCccacaaguccuguauucuuacucaaguucagagaccuugacaugccaucugaucuu
((((((((((((((..((((((((((...(((((((((((..(((.(((((((.(((((..(((.((.(((((((..............))))))).)).)))..))))).))))))).)))..))))))...))).))....))))))))))..))))))))))))))

Structure
              cu          -cuu  -   ---      ca   c       A     CA   U  C       guauag 
gagguuagauggca  uugggguuuc    cu gag   gaauau  gac uguggga AGGUC  ACC CA AUGUCCU      a
||||||||||||||  ||||||||||    || |||   ||||||  ||| ||||||| |||||  ||| || |||||||       
uucuagucuaccgu  aguuccagag    ga cuc   cuuaug  cug acaccCU UCCAG  UGG GU UAUAggg      a
              ac          acuu  a   auu      uc   a       A     AC   U  A       agaaau 


Annotation confidence Not enough data
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Genome context
chr22: 3239208-3239376 [-]

Database links

Mature tgu-miR-2188-5p

Accession MIMAT0014480
Description Taeniopygia guttata tgu-miR-2188-5p mature miRNA
Sequence 54 - AAGGUCCAACCUCACAUGUCCU - 75
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-2188-3p

Accession MIMAT0026967
Description Taeniopygia guttata tgu-miR-2188-3p mature miRNA
Sequence 93 - AUAUAUGUGGUCAGACCUAUC - 113
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727