miRBase entry: tgu-mir-33

Stem-loop tgu-mir-33


Accession
MI0013752
Description
Taeniopygia guttata tgu-mir-33 precursor miRNA
Gene family
MIPF0000070; mir-33


Sequence

ggcagcuguaGUGCAUUGUAGUUGCAUUGCauguuguggcagugacugugCAAUGUUUCUGCAGUGCAGU
.(((.((((((.((((((((....((((((........))))))....))))))))..)))))))))...

Structure
--g   g      -U        GUUG      aug 
   gca cuguaG  GCAUUGUA    CAUUGC   u
   ||| ||||||  ||||||||    ||||||    
   CGU GACGUC  UGUAACgu    gugacg   u
UGA   -      UU        guca      gug 


Annotation confidence Not enough data
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Genome context
chr1A: 48937654-48937723 [-]

Database links

Mature tgu-miR-33-5p

Accession MIMAT0014538
Description Taeniopygia guttata tgu-miR-33-5p mature miRNA
Sequence 11 - GUGCAUUGUAGUUGCAUUGC - 30
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-33-3p

Accession MIMAT0026993
Description Taeniopygia guttata tgu-miR-33-3p mature miRNA
Sequence 51 - CAAUGUUUCUGCAGUGCAGU - 70
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727