miRBase entry: tgu-mir-181b-2

Stem-loop tgu-mir-181b-2


Accession
MI0013783
Description
Taeniopygia guttata tgu-mir-181b-2 precursor miRNA
Gene family
MIPF0000007; mir-181


Sequence

ggcugcaaucAACAUUCAUUGCUGUCGGUGGGUUuucauuucuaucaACUCACUGACCAAUGAAUGCAaacugc
....(((.....(((((((((..(((((((((((............)))))))))))))))))))).....)))

Structure
ggcu   aucAA         CU           uucau 
    gca     CAUUCAUUG  GUCGGUGGGUU     u
    |||     |||||||||  |||||||||||      
    cgu     GUAAGUAAC  CAGUCACUCAa     u
----   caaAC         --           cuauc 


Annotation confidence Not enough data
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Genome context
chr17: 10713241-10713314 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-181b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-181b-5p

Accession MIMAT0014563
Description Taeniopygia guttata tgu-miR-181b-5p mature miRNA
Sequence 11 - AACAUUCAUUGCUGUCGGUGGGUU - 34
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-181b-2-3p

Accession MIMAT0031044
Description Taeniopygia guttata tgu-miR-181b-2-3p mature miRNA
Sequence 48 - ACUCACUGACCAAUGAAUGCA - 68
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727