miRBase entry: tgu-mir-204-4

Stem-loop tgu-mir-204-4


Accession
MI0013794
Description
Taeniopygia guttata tgu-mir-204-4 precursor miRNA
Gene family
MIPF0000042; mir-204

Literature search
1 open access papers mention tgu-mir-204-4
(1 sentences)

Sequence

cccugugagcUUCCCUUUGUCAUCCUAUGCCUgagcgaugccuggaggcugggacggccaagggaggcccacgggcugccacccacagcccc
....(((.(((((((((.(((.(((((.((((..((...))....))))))))).))).))))))))).)))((((((.......)))))).

Structure
----------------cccu   a         U   A     U    --ga  g 
                    gug gcUUCCCUU GUC UCCUA GCCU    gc  
                    ||| ||||||||| ||| ||||| ||||    || a
                    cac cggagggaa cgg agggu cgga    cg  
ccccgacacccaccgucggg   c         c   c     -    gguc  u 


Annotation confidence Not enough data
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Genome context
chr28: 1367959-1368050 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-204-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-204

Accession MIMAT0014570
Description Taeniopygia guttata tgu-miR-204 mature miRNA
Sequence 11 - UUCCCUUUGUCAUCCUAUGCCU - 32
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727