miRBase entry: tgu-mir-20b

Stem-loop tgu-mir-20b


Accession
MI0013819
Description
Taeniopygia guttata tgu-mir-20b precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

cuagcaguauCAAAGUGCUCAUAGUGCAGGUAGcuuggaaauggaccuACUGUAAUGUGGGCACUUACAguac
......((((..(((((((((((.(((((.(((.((.......)).)))))))).)))))))))))...))))

Structure
cuagca    -CA           G     G   c  gg 
      guau   AAGUGCUCAUA UGCAG UAG uu  a
      ||||   ||||||||||| ||||| ||| ||  a
      caug   UUCACGGGUGU AUGUC Auc ag  a
------    ACA           A     -   c  gu 


Annotation confidence Not enough data
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Genome context
chr4A: 7274092-7274164 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from tgu-mir-20b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-20b-5p

Accession MIMAT0014591
Description Taeniopygia guttata tgu-miR-20b-5p mature miRNA
Sequence 11 - CAAAGUGCUCAUAGUGCAGGUAG - 33
Evidence experimental
454 [1], Illumina [2]

Mature tgu-miR-20b-3p

Accession MIMAT0027017
Description Taeniopygia guttata tgu-miR-20b-3p mature miRNA
Sequence 49 - ACUGUAAUGUGGGCACUUACA - 69
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727