miRBase entry: tgu-mir-216b

Stem-loop tgu-mir-216b


Accession
MI0013821
Description
Taeniopygia guttata tgu-mir-216b precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

acagacugggAAAUCUCUGCAGGCAAGUGUGaugucuuuauagcaaucucACAAUUACCUGUAGAGAUUCU
........((((.((((((((((.((.(((((((.((....))))...))))).)).))))))))))))))

Structure
acagacug    A          C  G     ---  u  u 
        ggAA UCUCUGCAGG AA UGUGa   ug cu u
        |||| |||||||||| || |||||   || ||  
        UCUU AGAGAUGUCC UU ACAcu   ac ga a
--------    -          A  A     cua  -  u 


Annotation confidence Not enough data
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Genome context
chr3: 28144514-28144584 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from tgu-mir-216b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-216b-5p

Accession MIMAT0014593
Description Taeniopygia guttata tgu-miR-216b-5p mature miRNA
Sequence 11 - AAAUCUCUGCAGGCAAGUGUG - 31
Evidence experimental
454 [1], Illumina [2]

Mature tgu-miR-216b-3p

Accession MIMAT0027018
Description Taeniopygia guttata tgu-miR-216b-3p mature miRNA
Sequence 51 - ACAAUUACCUGUAGAGAUUCU - 71
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727