miRBase entry: tgu-mir-301

Stem-loop tgu-mir-301


Accession
MI0013823
Description
Taeniopygia guttata tgu-mir-301 precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

aguGCUCUGACUUUAUUGCACUACUguacuauacagagagCAGUGCAAUAGUAUUGUCAAAGCaucugagagc
.(((((.((((.((((((((((.((.(.((....))).)).))))))))))....)))).)))))........

Structure
-------a     C    ---U          A  g a  a 
        guGCU UGAC    UUAUUGCACU CU u cu u
        ||||| ||||    |||||||||| || | ||  
        uaCGA ACUG    GAUAACGUGA ga a ga a
cgagaguc     A    UUAU          C  g -  c 


Annotation confidence Not enough data
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Genome context
chr19: 8783990-8784062 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-301
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-301-5p

Accession MIMAT0017391
Description Taeniopygia guttata tgu-miR-301-5p mature miRNA
Sequence 4 - GCUCUGACUUUAUUGCACUACU - 25
Evidence experimental
Illumina [2]

Mature tgu-miR-301-3p

Accession MIMAT0014595
Description Taeniopygia guttata tgu-miR-301-3p mature miRNA
Sequence 41 - CAGUGCAAUAGUAUUGUCAAAGC - 63
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727