miRBase entry: tgu-mir-460a

Stem-loop tgu-mir-460a


Accession
MI0013844
Description
Taeniopygia guttata tgu-mir-460a precursor miRNA
Gene family
MIPF0000134; mir-460


Sequence

cuuuauagcaCCUGCAUUGUACACACUGUGUguguggcuggaaaugCACAGCGCAUACAAUGUGGAUUcuguacaagucgcu
.............((.((((((((((..((((((((.(((........)))))))))))..))).....)))))))...)).

Structure
cuuuauagcaCCU  --A       -----   UG        g   gaa 
             GC   UUGUACA     CAC  UGUgugug cug   a
             ||   |||||||     |||  |||||||| |||    
             cg   aacaugu     GUG  ACAUACGC GAC   u
------------u  cug       cUUAG   UA        -   ACg 


Annotation confidence Not enough data
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Genome context
chr2: 1092239-1092320 [-]

Database links

Mature tgu-miR-460a-5p

Accession MIMAT0014614
Description Taeniopygia guttata tgu-miR-460a-5p mature miRNA
Sequence 11 - CCUGCAUUGUACACACUGUGU - 31
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-460a-3p

Accession MIMAT0014658
Description Taeniopygia guttata tgu-miR-460a-3p mature miRNA
Sequence 47 - CACAGCGCAUACAAUGUGGAUU - 68
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727