Stem-loop sequence bmo-mir-2733a-2

Accession MI0013858
Description Bombyx mori miR-2733a-2 stem-loop
Gene family MIPF0000766; mir-2733
Stem-loop 
       -     u c            a        -------ucaccaca     c  cc 
uauauca cuggg g augaugauugug uagagaga               ucacg ug  a
||||||| ||||| | |||||||||||| ||||||||               ||||| ||   
guauagu gacuc c uacuacugacgu aucucucu               agugu ac  u
       u     u a            a        cuauaucuucucuac     -  au
Get sequence
Deep sequencing
6 reads, 2 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2176: 344959-345075 [-]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2733a-2
bmo-mir-9d nscaf2176: 353029-353113 [-]
bmo-mir-2733c nscaf2176: 352194-352275 [-]
bmo-mir-2733g nscaf2176: 346317-346428 [-]
bmo-mir-2733a-1 nscaf2176: 346147-346230 [-]
bmo-mir-2851-1 nscaf2176: 346140-346238 [+]
bmo-mir-2733b-2 nscaf2176: 345690-345818 [-]
bmo-mir-2733h nscaf2176: 345532-345612 [-]
bmo-mir-2733b-1 nscaf2176: 345409-345488 [-]
bmo-mir-2733a-3 nscaf2176: 345068-345215 [-]
bmo-mir-2851-2 nscaf2176: 345032-345130 [+]
bmo-mir-2733a-2 nscaf2176: 344959-345075 [-]
bmo-mir-2733f nscaf2176: 344550-344667 [-]
bmo-mir-2733i nscaf2176: 343361-343468 [-]
bmo-mir-2733e-1 nscaf2176: 341366-341463 [-]
bmo-mir-2733e-2 nscaf2176: 341036-341134 [-]

Mature sequence bmo-miR-2733a-5p

Accession MIMAT0012611
Previous IDs bmo-miR-2733a
Sequence

5 -  

ucacugggugcaugaugauugu

 - 26

Get sequence
Deep sequencing 6 reads, 2 experiments
Evidence experimental; Solexa [1]

References

1
PMID:20089182 "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development" Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R BMC Genomics. 11:52(2010).