miRBase entry: hma-mir-3003a

Stem-loop hma-mir-3003a


Accession
MI0013863
Description
Hydra magnipapillata hma-mir-3003a precursor miRNA
Gene family
MIPF0000818; mir-3003


Sequence

aagcuauuuauaucaUUACCAAAUUGCACACUUAACauaacuguUAAAUGUGCAAACUGGUAAUGAaauaaauacug
.((.(((((((.(((((((((..(((((((.((((((....)))))).)))))))..))))))))).))))))))).

Structure
a  c       a         AA       C      u 
 ag uauuuau ucaUUACCA  UUGCACA UUAACa a
 || ||||||| |||||||||  ||||||| ||||||  
 uc auaaaua AGUAAUGGU  AACGUGU AAUugu a
g  -       a         CA       A      c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hma-miR-3003a-5p

Accession MIMAT0014667
Description Hydra magnipapillata hma-miR-3003a-5p mature miRNA
Sequence 16 - UUACCAAAUUGCACACUUAAC - 36
Evidence experimental
454 [1]

Mature hma-miR-3003a-3p

Accession MIMAT0014668
Description Hydra magnipapillata hma-miR-3003a-3p mature miRNA
Sequence 45 - UAAAUGUGCAAACUGGUAAUGA - 66
Evidence experimental
454 [1]

References

  1. PubMed ID: 20228792
    The dynamic genome of Hydra
    "Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, Rattei T, Balasubramanian PG, Borman J, Busam D, Disbennett K, Pfannkoch C, Sumin N, Sutton GG, Viswanathan LD, Walenz B, Goodstein DM, Hellsten U, Kawashima T, Prochnik SE, Putnam NH,"
    "Nature (2010) 464:592-596