Stem-loop hsv1-mir-H16

Accession

MI0013890

Description

Herpes Simplex Virus 1 hsv1-mir-H16 precursor miRNA

Sequence

gcgcagagagccucguuaagagCCAGGAGGCUGGGAUCGAAGGCcacauacgcgcgcucgaacgcccccgccuuccagcugcugccgggggacucuucgc
(((.((((..(((((.((..(((..((((((.(((.((((..(((......).))..))))....))).))))))..)))..)).)))))..)))).)))

Structure

   c    ag     u  ag   CA      U   ---A    AG  - ac 
gcg agag  ccucg ua  agC  GGAGGC GGG    UCGA  GC c  a
||| ||||  ||||| ||  |||  |||||| |||    ||||  || |   
cgc ucuc  ggggc gu  ucg  cuuccg ccc    agcu  cg g  u
   u    ag     c  cg   ac      c   cgca    cg  c ca 

Annotation confidence Not enough data

Genome context

Unknown

Mature hsv1-miR-H16

• Accession: MIMAT0014694
• Description: Herpes Simplex Virus 1 hsv1-miR-H16 mature miRNA
• Sequence: 23 - CCAGGAGGCUGGGAUCGAAGGC - 44
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20181707
   Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
   "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
   "J Virol (2010) 84:4659-4672