Stem-loop hsv2-mir-H11

Accession

MI0013898

Description

Herpes Simplex Virus 2 hsv2-mir-H11 precursor miRNA

Gene family

MIPF0000833; mir-H11

Sequence

ucggcagggggcguggccgcccuucuaaaaaaagugagaacgcgAAGCGUUCGCACUUUGUCCUAauaauauauauacuaUUAGGACAAAGUGCGAACGCUUcgcguucucacuuuuuuuagaagggcggccacgcccccuuuga
((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((..........)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

    c                                                               auau 
ucgg agggggcguggccgcccuucuaaaaaaagugagaacgcgAAGCGUUCGCACUUUGUCCUAaua    a
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
aguu ucccccgcaccggcgggaagauuuuuuucacucuugcgcUUCGCAAGCGUGAAACAGGAUUau    u
    -                                                               caua 

Annotation confidence Not enough data

Genome context

Unknown

Mature hsv2-miR-H11-5p

• Accession: MIMAT0014697
• Description: Herpes Simplex Virus 2 hsv2-miR-H11-5p mature miRNA
• Sequence: 45 - AAGCGUUCGCACUUUGUCCUA - 65
• Evidence: experimental ; Illumina [1]

Mature hsv2-miR-H11-3p

• Accession: MIMAT0014698
• Description: Herpes Simplex Virus 2 hsv2-miR-H11-3p mature miRNA
• Sequence: 81 - UUAGGACAAAGUGCGAACGCUU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20181707
   Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
   "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
   "J Virol (2010) 84:4659-4672