miRBase entry: api-mir-252a

Stem-loop api-mir-252a


Accession
MI0013919
Description
Acyrthosiphon pisum api-mir-252a precursor miRNA
Gene family
MIPF0000285; mir-252

Literature search
1 open access papers mention api-mir-252a
(1 sentences)

Sequence

CUAAGUACUAGUGCCGCGGGAGugauauccguuuuuuguaucuccugcagcucaagugcuuauca
.((((((((.(.((.(((((((..(((.........)))..))))))).)).).))))))))...

Structure
--C        A U  C       ug   ucc 
   UAAGUACU G GC GCGGGAG  aua   g
   |||||||| | || |||||||  |||   u
   auucguga c cg cguccuc  ugu   u
acu        a u  a       ua   uuu 


Annotation confidence Not enough data
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Genome context
GL349872.1: 519999-520063 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from api-mir-252a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-252a

Accession MIMAT0014719
Description Acyrthosiphon pisum api-miR-252a mature miRNA
Sequence 1 - CUAAGUACUAGUGCCGCGGGAG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281