miRBase entry: api-mir-279a

Stem-loop api-mir-279a


Accession
MI0013924
Description
Acyrthosiphon pisum api-mir-279a precursor miRNA
Gene family
MIPF0000184; mir-279


Sequence

augggugugugucuagugacaugcguuuuauauuugacagacaUGACUAGAUCCACACUCAUCC
(((((((((.(((((((..((((((((........))).).))))))))))).)))))))))..

Structure
--         u       ga    - -   uua 
  augggugug gucuagu  caug c guu   u
  ||||||||| |||||||  |||| | |||    
  UACUCACAC UAGAUCA  GUac g cag   a
CC         C       --    a a   uuu 


Annotation confidence Not enough data
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Genome context
GL349806.1: 546384-546447 [-]

Database links

Mature api-miR-279a

Accession MIMAT0014724
Description Acyrthosiphon pisum api-miR-279a mature miRNA
Sequence 44 - UGACUAGAUCCACACUCAUCC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281