Stem-loop sequence api-mir-2a

Accession

MI0013927 (change log)

Description

Acyrthosiphon pisum miR-2a stem-loop

Gene family

MIPF0000049; mir-2

Literature search

3 open access papers mention api-mir-2a
(10 sentences)

Stem-loop

   --    -      -aa      a   -  g u 
5'   cuca caaagu   cuguga aug uu g a
     |||| ||||||   |||||| ||| || | u
3'   gagu guuucg   gacacu uac ga u a
   gc    a      acc      a   u  g u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Acyr_2.0; GCA_000142985.2): GL349742.1: 368362-368423 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from api-mir-2a

• api-mir-71: GL349742.1: 367510-367571 [+]
• api-mir-2c: GL349742.1: 367625-367689 [+]
• api-mir-13a: GL349742.1: 367742-367802 [+]
• api-mir-2a: GL349742.1: 368362-368423 [+]
• api-mir-2b: GL349742.1: 368487-368567 [+]

Database links

• EntrezGene:Mir2a
• miRBase Tracker:MI0013927

Mature sequence api-miR-2a

• Accession: MIMAT0014727
• Sequence: 39 - uaucacagccagcuuugaugagcg - 62
• Evidence: experimental; Illumina [1]

References

1. PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).