miRBase entry: api-mir-317

Stem-loop api-mir-317


Accession
MI0013934
Description
Acyrthosiphon pisum api-mir-317 precursor miRNA

Literature search
3 open access papers mention api-mir-317
(4 sentences)

Sequence

aaccucgcuguguuaacuugucauguuauuucgauaauuauucgaugaaaucagagUGAACACAGCUGGUGGUAUCU
.(((..((((((((.((((......(((..((((.......))))))).....)))).)))))))).))).......

Structure
------a   uc        a    gucaug   uu    ua 
       acc  gcuguguu acuu      uua  ucga  a
       |||  |||||||| ||||      |||  ||||  u
       UGG  CGACACAA Ugag      agu  agcu  u
UCUAUGG   -U        G    -acuaa   --    ua 


Annotation confidence Not enough data
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Genome context
GL349754.1: 848266-848342 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from api-mir-317
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-317

Accession MIMAT0014732
Description Acyrthosiphon pisum api-miR-317 mature miRNA
Sequence 57 - UGAACACAGCUGGUGGUAUCU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281