miRBase entry: api-mir-92a-2

Stem-loop api-mir-92a-2


Accession
MI0013945
Description
Acyrthosiphon pisum api-mir-92a-2 precursor miRNA
Gene family
MIPF0001099; mir-92_2

Literature search
1 open access papers mention api-mir-92a-2
(1 sentences)

Sequence

uggucgucgacuugugcaacuauuguacaauuuuaaucagacuaaUAUUGCACAUGUCCCGGCCAAU
((((((..(((.(((((((.(((((.................)))))))))))).))).))))))..

Structure
--      uc   u       c     uacaauu 
  uggucg  gac ugugcaa uauug       u
  ||||||  ||| ||||||| |||||       u
  ACCGGC  CUG ACACGUU AUaau       a
UA      -C   U       -     cagacua 


Annotation confidence Not enough data
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Genome context
GL364522.1: 5137-5203 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from api-mir-92a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-92a

Accession MIMAT0014742
Description Acyrthosiphon pisum api-miR-92a mature miRNA
Sequence 46 - UAUUGCACAUGUCCCGGCCAAU - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281