miRBase entry: api-mir-3027

Stem-loop api-mir-3027


Accession
MI0013970
Description
Acyrthosiphon pisum api-mir-3027 precursor miRNA


Sequence

ggggauaauuguaggacuuacugugaauuuguaauacagCCAGUCUUGCAUUUAUUCCACU
.(((((((.(((((((((..(((((.........)))))..))))))))).)))))))...

Structure
--g       u         ua     aau 
   gggauaa uguaggacu  cugug   u
   ||||||| |||||||||  |||||   u
   CCUUAUU ACGUUCUGA  gacau   g
UCA       U         CC     aau 


Annotation confidence Not enough data
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Genome context
GL350604.1: 163757-163817 [-]

Database links

Mature api-miR-3027

Accession MIMAT0014763
Description Acyrthosiphon pisum api-miR-3027 mature miRNA
Sequence 40 - CCAGUCUUGCAUUUAUUCCACU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281