miRBase entry: api-mir-3041

Stem-loop api-mir-3041


Accession
MI0013992
Description
Acyrthosiphon pisum api-mir-3041 precursor miRNA


Sequence

ucuuguucaucaaaguuuuaggucguacacgucuauaggaacacUUAAAGCUUUGAUGACGGGAUA
((((((.((((((((((((((((.((.(.(.......)).))))))))))))))))))))))))..

Structure
--      u                c  a a gu 
  ucuugu caucaaaguuuuaggu gu c c  c
  |||||| |||||||||||||||| || | |  u
  AGGGCA GUAGUUUCGAAAUUca ca g g  a
AU      -                -  a - au 


Annotation confidence Not enough data
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Genome context
GL349928.1: 621192-621257 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from api-mir-3041
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-3041

Accession MIMAT0014779
Description Acyrthosiphon pisum api-miR-3041 mature miRNA
Sequence 45 - UUAAAGCUUUGAUGACGGGAUA - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281