miRBase entry: api-mir-3055-1

Stem-loop api-mir-3055-1


Accession
MI0014018
Description
Acyrthosiphon pisum api-mir-3055-1 precursor miRNA
Gene family
MIPF0001909; mir-3055


Sequence

aucguuuaucgcgaaccgcuaugugauuuaaaauuuaGCAGUUCGCGAUAAGCGGCCG
.(((((((((((((((.((((.((........)).)))).)))))))))))))))...

Structure
--a               c    u  gau 
   ucguuuaucgcgaac gcua gu   u
   ||||||||||||||| |||| ||    
   GGCGAAUAGCGCUUG CGau ua   u
GCC               A    u  aaa 


Annotation confidence Not enough data
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Genome context
GL349643.1: 1800302-1800359 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from api-mir-3055-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-3055

Accession MIMAT0014798
Description Acyrthosiphon pisum api-miR-3055 mature miRNA
Sequence 38 - GCAGUUCGCGAUAAGCGGCCG - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281