Stem-loop sequence mmu-mir-3074-1

Accession

MI0014037 (change log)

Symbol

MGI:Mir3074-1

Description

Mus musculus miR-3074-1 stem-loop

Gene family

MIPF0001103; mir-3074

Literature search

5 open access papers mention mmu-mir-3074-1
(18 sentences)

Stem-loop

          -a    u  u        a    -gc    gugug 
5' gggcucg  cucc gu ccugcuga cuga   cagu     a
   |||||||  |||| || |||||||| ||||   ||||     a
3' ccugggc  gagg ca ggaugacu gacu   guca     a
          gg    c  c        c    aua    agagu 

Deep sequencing

1516 reads, 0 reads per million, 85 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr13: 63301199-63301283 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000175000 ; Mir3074-1-201; exon 1

  antisense

  OTTMUST00000076332 ; AC130827.2-002; intron 3

  ENSMUST00000159152 ; 2010111I01Rik-002; intron 3

  ENSMUST00000021911 ; 2010111I01Rik-201; intron 15

Clustered miRNAs

< 10kb from mmu-mir-3074-1

• mmu-mir-24-1: chr13: 63301208-63301275 [+]
• mmu-mir-3074-1: chr13: 63301199-63301283 [-]
• mmu-mir-27b: chr13: 63300712-63300784 [+]
• mmu-mir-23b: chr13: 63300484-63300557 [+]

Database links

• EntrezGene:Mir3074-1
• MGI:Mir3074-1
• RNAcentral:URS000075B1F6_10090
• miRBase Tracker:MI0014037

Mature sequence mmu-miR-3074-5p

• Accession: MIMAT0014856
• Sequence: 14 - guuccugcugaacugagccagu - 35
• Deep sequencing: 1576 reads, 57 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000054204A_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3074-5p
  • miRDB:mmu-miR-3074-5p

Mature sequence mmu-miR-3074-1-3p

• Accession: MIMAT0014857
• Sequence: 52 - gauaucagcucaguaggcaccg - 73
• Deep sequencing: 721 reads, 80 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000046F124_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3074-1-3p
  • miRDB:mmu-miR-3074-1-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).