Stem-loop sequence mmu-mir-669a-5

Accession

MI0014055 (change log)

Symbol

MGI:Mir669a-5

Description

Mus musculus miR-669a-5 stem-loop

Gene family

MIPF0000316; mir-467

Literature search

15 open access papers mention mmu-mir-669a-5
(22 sentences)

Stem-loop

   u    a     g    gu        c     c    c   au 
5'  gugc ugugu uaua  ugugugug auguu augu uau  u
    |||| ||||| ||||  |||||||| ||||| |||| |||   
3'  cacg acgca auau  acacacac uacaa uaca aua  u
   a    a     a    gc        a     -    u   ag 

Deep sequencing

98132 reads, 266 reads per million, 105 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10481761-10481847 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000179130 ; Mir669a-5-201; exon 1

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-669a-5

• mmu-mir-466f-3: chr2: 10471953-10472046 [+]
• mmu-mir-297a-2: chr2: 10472254-10472343 [+]
• mmu-mir-466o: chr2: 10472540-10472623 [+]
• mmu-mir-467c: chr2: 10473931-10474027 [+]
• mmu-mir-466b-1: chr2: 10474219-10474300 [+]
• mmu-mir-669a-3: chr2: 10474433-10474541 [+]
• mmu-mir-669k: chr2: 10475300-10475426 [+]
• mmu-mir-467a-1: chr2: 10476346-10476418 [+]
• mmu-mir-466b-8: chr2: 10476628-10476713 [+]
• mmu-mir-669a-1: chr2: 10476853-10476949 [+]
• mmu-mir-669g: chr2: 10477150-10477272 [+]
• mmu-mir-669j: chr2: 10477910-10478030 [+]
• mmu-mir-467a-2: chr2: 10478798-10478880 [+]
• mmu-mir-466e: chr2: 10479088-10479171 [+]
• mmu-mir-669a-4: chr2: 10479315-10479401 [+]
• mmu-mir-467b: chr2: 10481248-10481320 [+]
• mmu-mir-466c-1: chr2: 10481534-10481617 [+]
• mmu-mir-669a-5: chr2: 10481761-10481847 [+]
• mmu-mir-467a-3: chr2: 10483678-10483760 [+]
• mmu-mir-466c-2: chr2: 10483966-10484055 [+]
• mmu-mir-669a-6: chr2: 10484196-10484282 [+]
• mmu-mir-467a-4: chr2: 10486135-10486217 [+]
• mmu-mir-466b-4: chr2: 10486423-10486512 [+]
• mmu-mir-669a-7: chr2: 10486653-10486739 [+]
• mmu-mir-467a-5: chr2: 10488599-10488681 [+]
• mmu-mir-466b-5: chr2: 10488887-10488974 [+]
• mmu-mir-669p-1: chr2: 10489116-10489202 [+]
• mmu-mir-467a-6: chr2: 10491048-10491130 [+]
• mmu-mir-466c-3: chr2: 10491336-10491425 [+]
• mmu-mir-669a-8: chr2: 10491566-10491652 [+]

Database links

• EntrezGene:Mir669a-5
• MGI:Mir669a-5
• RNAcentral:URS000075D337_10090
• miRBase Tracker:MI0014055

Mature sequence mmu-miR-669a-5p

• Accession: MIMAT0003477
• Previous IDs: mmu-miR-669a
• Sequence: 16 - aguugugugugcauguucaugucu - 39
• Deep sequencing: 946140 reads, 103 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002AA0E2_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669a-5p
  • miRDB:mmu-miR-669a-5p
  • microrna.org:mmu-miR-669a-5p

Mature sequence mmu-miR-669a-3p

• Accession: MIMAT0017243
• Sequence: 52 - acauaacauacacacacacguau - 74
• Deep sequencing: 209132 reads, 101 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000061264D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669a-3p
  • miRDB:mmu-miR-669a-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).