Stem-loop sequence mmu-mir-669a-7

Accession MI0014061
Description Mus musculus miR-669a-7 stem-loop
Gene family MIPF0000316; mir-467
Stem-loop 
u    a     g    gu        c     c    c   au 
 gugc ugugu uaua  ugugugug auguu augu uau  u
 |||| ||||| ||||  |||||||| ||||| |||| |||   
 cacg acgca auau  acacacac uacaa uaca aua  u
a    a     a    gc        a     -    u   ag
Get sequence
Deep sequencing
11506 reads, 81 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr2: 10486653-10486739 [+]
sense
OTTMUST00000026263 ; Sfmbt2-001; intron 10
ENSMUST00000180364 ; AL772216.38-201; exon 1
ENSMUST00000041105 ; Sfmbt2-001; intron 10
ENSMUST00000116594 ; Sfmbt2-201; intron 11
Clustered miRNAs
< 10kb from mmu-mir-669a-7
mmu-mir-669a-1 chr2: 10476853-10476949 [+]
mmu-mir-669g chr2: 10477150-10477272 [+]
mmu-mir-669j chr2: 10477910-10478030 [+]
mmu-mir-467a-2 chr2: 10478798-10478880 [+]
mmu-mir-466e chr2: 10479088-10479171 [+]
mmu-mir-669a-4 chr2: 10479315-10479401 [+]
mmu-mir-467b chr2: 10481248-10481320 [+]
mmu-mir-466c-1 chr2: 10481534-10481617 [+]
mmu-mir-669a-5 chr2: 10481761-10481847 [+]
mmu-mir-467a-3 chr2: 10483678-10483760 [+]
mmu-mir-466c-2 chr2: 10483966-10484055 [+]
mmu-mir-669a-6 chr2: 10484196-10484282 [+]
mmu-mir-467a-4 chr2: 10486135-10486217 [+]
mmu-mir-466b-4 chr2: 10486423-10486512 [+]
mmu-mir-669a-7 chr2: 10486653-10486739 [+]
mmu-mir-467a-5 chr2: 10488599-10488681 [+]
mmu-mir-466b-5 chr2: 10488887-10488974 [+]
mmu-mir-669p-1 chr2: 10489116-10489202 [+]
mmu-mir-467a-6 chr2: 10491048-10491130 [+]
mmu-mir-669a-8 chr2: 10491566-10491652 [+]
mmu-mir-467a-7 chr2: 10493510-10493592 [+]
mmu-mir-466b-6 chr2: 10493798-10493887 [+]
mmu-mir-669a-9 chr2: 10494028-10494114 [+]
mmu-mir-467a-8 chr2: 10495980-10496062 [+]
mmu-mir-466b-7 chr2: 10496268-10496355 [+]
mmu-mir-669p-2 chr2: 10496497-10496583 [+]
Database links

Mature sequence mmu-miR-669a-5p

Accession MIMAT0003477
Previous IDs mmu-miR-669a
Sequence

16 -  

aguugugugugcauguucaugucu

 - 39

Get sequence
Deep sequencing 90605 reads, 72 experiments
Evidence experimental; Solexa [1]
Predicted targets

Mature sequence mmu-miR-669a-3p

Accession MIMAT0017243
Sequence

52 -  

acauaacauacacacacacguau

 - 74

Get sequence
Deep sequencing 41656 reads, 75 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).