Stem-loop sequence mmu-mir-466b-5

Accession

MI0014063

Description

Mus musculus miR-466b-5 stem-loop

Gene family

MIPF0000208; mir-466

Stem-loop

u    ----       -g          ac     c       aa 
 gugu    auguguu  augugugugu  augua augugug  u
 ||||    |||||||  ||||||||||  ||||| |||||||  a
 cacg    uacacag  uacacacgca  uacau uacauau  u
a    agua       aa          ca     a       ag 

Deep sequencing

9936 reads, 85 experiments

Genome context

• Coordinates (GRCm38): chr2: 10488887-10488974 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-466b-5

• mmu-mir-466e: chr2: 10479088-10479171 [+]
• mmu-mir-669a-4: chr2: 10479315-10479401 [+]
• mmu-mir-467b: chr2: 10481248-10481320 [+]
• mmu-mir-466c-1: chr2: 10481534-10481617 [+]
• mmu-mir-669a-5: chr2: 10481761-10481847 [+]
• mmu-mir-467a-3: chr2: 10483678-10483760 [+]
• mmu-mir-466c-2: chr2: 10483966-10484055 [+]
• mmu-mir-669a-6: chr2: 10484196-10484282 [+]
• mmu-mir-467a-4: chr2: 10486135-10486217 [+]
• mmu-mir-466b-4: chr2: 10486423-10486512 [+]
• mmu-mir-669a-7: chr2: 10486653-10486739 [+]
• mmu-mir-467a-5: chr2: 10488599-10488681 [+]
• mmu-mir-466b-5: chr2: 10488887-10488974 [+]
• mmu-mir-669p-1: chr2: 10489116-10489202 [+]
• mmu-mir-467a-6: chr2: 10491048-10491130 [+]
• mmu-mir-669a-8: chr2: 10491566-10491652 [+]
• mmu-mir-467a-7: chr2: 10493510-10493592 [+]
• mmu-mir-466b-6: chr2: 10493798-10493887 [+]
• mmu-mir-669a-9: chr2: 10494028-10494114 [+]
• mmu-mir-467a-8: chr2: 10495980-10496062 [+]
• mmu-mir-466b-7: chr2: 10496268-10496355 [+]
• mmu-mir-669p-2: chr2: 10496497-10496583 [+]
• mmu-mir-467a-9: chr2: 10498393-10498475 [+]
• mmu-mir-466b-2: chr2: 10498685-10498766 [+]

Database links

• ENTREZGENE: 100526488;Mir466b-5

Mature sequence mmu-miR-466b-5p

• Accession: MIMAT0004875
• Sequence: 12 - ugauguguguguacauguacau - 33
• Deep sequencing: 26392 reads, 71 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-466b-5p
  • MICRORNA.ORG:mmu-miR-466b-5p
  • MIRDB:mmu-miR-466b-5p
  • RNA22-MMU:mmu-miR-466b-5p
  • TARGETSCAN-VERT:mmu-miR-466b-5p

Mature sequence mmu-miR-466b-3p

• Accession: MIMAT0004876
• Sequence: 53 - auacauacacgcacacauaaga - 74
• Deep sequencing: 49898 reads, 76 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-466b-3p
  • MICRORNA.ORG:mmu-miR-466b-3p
  • MIRDB:mmu-miR-466b-3p
  • RNA22-MMU:mmu-miR-466b-3p
  • TARGETSCAN-VERT:mmu-miR-466b-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).