Stem-loop oar-let-7c

Accession

MI0014114

Description

Ovis aries oar-let-7c precursor miRNA

Literature search

44 open access papers mention oar-let-7c
(135 sentences)

Sequence

8699521 reads, 13482.0 reads per million, 143 experiments

gcauccggguUGAGGUAGUAGGUUGUAUGGUUUagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCCUuggagc
((.((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..))))))))

Structure

  a      uU   G   U             Ua  g ua  c 
gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
|| ||||||  ||| ||| |||||||||||||  || |  || c
cg agguUC  UUC AUC UCCAACAUGUCaa  uu a  gu  
  -      CU   G   U             --  g gg  c 

Annotation confidence High

Genome context

chr1: 138651622-138651705 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oar-let-7c

Mature oar-let-7c-5p

• Accession: MIMAT0014964
• Description: Ovis aries oar-let-7c-5p mature miRNA
• Sequence: 11 - UGAGGUAGUAGGUUGUAUGGUUU - 33
• Evidence: experimental ; cloned [1-2]

Mature oar-let-7c-3p

• Accession: MIMAT0061444
• Description: Ovis aries oar-let-7c-3p mature miRNA
• Sequence: 56 - CUGUACAACCUUCUAGCUUUCCU - 78
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 20140706
   Characterization of microRNAs from sheep (Ovis aries) using computational and experimental analyses
   "Sheng X, Song X, Yu Y, Niu L, Li S, Li H, Wei C, Liu T, Zhang L, Du L"
   "Mol Biol Rep (2011) 38:3161-3171


2. PubMed ID: 23269700
   MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200
   "Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E"
   "Physiol Genomics (2013) 45:151-161