Stem-loop sequence hsa-mir-3126

Accession

MI0014143 (change log)

Symbol

HGNC:MIR3126

Description

Homo sapiens miR-3126 stem-loop

Gene family

MIPF0001525; mir-3126

Literature search

1 open access papers mention hsa-mir-3126
(2 sentences)

Stem-loop

           a  a g   a         a   cuggu 
5' augauuau ug g gac gaugccaga gca     u
   |||||||| || | ||| ||||||||| |||      
3' uauuaaua ac c cug cuacggucu cgu     a
           g  a a   c         a   uuagu 

Deep sequencing

358 reads, 0 reads per million, 68 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr2: 69103682-69103755 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR3126
• HGNC:MIR3126
• RNAcentral:URS000075DA6A_9606
• miRBase Tracker:MI0014143

Mature sequence hsa-miR-3126-5p

• Accession: MIMAT0014989
• Sequence: 10 - ugagggacagaugccagaagca - 31
• Deep sequencing: 241 reads, 50 experiments
• Evidence: experimental; Illumina [2-4]
• Database links:
  • RNAcentral:URS0000022AAA_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3126-5p
  • TargetScanVert:hsa-miR-3126-5p
  • miRDB:hsa-miR-3126-5p
  • microrna.org:hsa-miR-3126-5p

Mature sequence hsa-miR-3126-3p

• Accession: MIMAT0015377
• Sequence: 46 - caucuggcauccgucacacaga - 67
• Deep sequencing: 112 reads, 38 experiments
• Evidence: experimental; SOLiD [1], Illumina [4]
• Predicted targets:
  • TargetMiner:hsa-miR-3126-3p
  • TargetScanVert:hsa-miR-3126-3p
  • miRDB:hsa-miR-3126-3p
  • microrna.org:hsa-miR-3126-3p

References

1. PMID:19784364 "Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors" Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP PLoS One. 4:e7192(2009).
2. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
4. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).