Stem-loop sequence hsa-mir-3130-1

Accession

MI0014147 (change log)

Symbol

HGNC:MIR3130-1

Description

Homo sapiens miR-3130-1 stem-loop

Gene family

MIPF0000845; mir-3130

Literature search

2 open access papers mention hsa-mir-3130-1
(5 sentences)

Stem-loop

                                     gu 
5' cuugucaugucuuacccagucuccggugcagccu  u
   ||||||||||||||||||||||||||||||||||  g
3' gaacaguacagaaugggucagaggccacgucgga  u
                                     ac 

Deep sequencing

1195 reads, 3.76 reads per million, 133 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr2: 206783234-206783308 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-3130-1

• hsa-mir-3130-2: chr2: 206783234-206783308 [+]
• hsa-mir-3130-1: chr2: 206783234-206783308 [-]

Database links

• EntrezGene:MIR3130-1
• HGNC:MIR3130-1
• RNAcentral:URS000075E216_9606
• miRBase Tracker:MI0014147

Mature sequence hsa-miR-3130-5p

• Accession: MIMAT0014995
• Sequence: 13 - uacccagucuccggugcagcc - 33
• Deep sequencing: 2284 reads, 114 experiments
• Evidence: experimental

Mature sequence hsa-miR-3130-3p

• Accession: MIMAT0014994
• Sequence: 44 - gcugcaccggagacuggguaa - 64
• Deep sequencing: 1244 reads, 85 experiments
• Evidence: experimental; Illumina [1-3]
• Database links:
  • RNAcentral:URS00002CA53E_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3130-3p
  • TargetScanVert:hsa-miR-3130-3p
  • miRDB:hsa-miR-3130-3p
  • microrna.org:hsa-miR-3130-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
3. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).