Stem-loop sequence hsa-mir-3136

Accession

MI0014158 (change log)

Symbol

HGNC:MIR3136

Description

Homo sapiens miR-3136 stem-loop

Gene family

MIPF0001575; mir-3136

Literature search

1 open access papers mention hsa-mir-3136
(1 sentences)

Stem-loop

         a                a      uuuuuc    a 
5' aauaug aacugacugaauaggu ggguca      ugug c
   |||||| |||||||||||||||| ||||||      ||||  
3' uuauac uugauugacuuaucca cccggu      acac u
         c                a      ------    g 

Deep sequencing

455 reads, 0 reads per million, 90 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr3: 69048958-69049035 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000343725 ; EOGT-005; intron 1

  OTTHUMT00000343724 ; EOGT-004; intron 8

  OTTHUMT00000343722 ; EOGT-002; intron 9

  OTTHUMT00000343723 ; EOGT-003; intron 9

  ENST00000496647 ; EOGT-005; intron 1

  ENST00000540764 ; EOGT-201; intron 5

  ENST00000403140 ; EOGT-004; intron 8

  ENST00000540955 ; EOGT-202; intron 8

  ENST00000383701 ; EOGT-002; intron 9

  ENST00000295571 ; EOGT-003; intron 9

Database links

• EntrezGene:MIR3136
• HGNC:MIR3136
• RNAcentral:URS000075A0FD_9606
• miRBase Tracker:MI0014158

Mature sequence hsa-miR-3136-5p

• Accession: MIMAT0015003
• Previous IDs: hsa-miR-3136
• Sequence: 10 - cugacugaauagguagggucauu - 32
• Deep sequencing: 434 reads, 87 experiments
• Evidence: experimental; Illumina [1-3]
• Database links:
  • RNAcentral:URS00000AF45F_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3136-5p
  • TargetScanVert:hsa-miR-3136-5p
  • miRDB:hsa-miR-3136-5p
  • microrna.org:hsa-miR-3136-5p

Mature sequence hsa-miR-3136-3p

• Accession: MIMAT0019203
• Sequence: 49 - uggcccaaccuauucaguuagu - 70
• Deep sequencing: 20 reads, 11 experiments
• Evidence: experimental; Illumina [2-3]
• Predicted targets:
  • TargetMiner:hsa-miR-3136-3p
  • TargetScanVert:hsa-miR-3136-3p
  • miRDB:hsa-miR-3136-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).
3. PMID:21606961 "Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia" Schotte D, Akbari Moqadam F, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML Leukemia. 25:1389-1399(2011).