Stem-loop sequence hsa-mir-544b

Accession

MI0014159 (change log)

Symbol

HGNC:MIR544B

Description

Homo sapiens miR-544b stem-loop

Gene family

MIPF0000436; mir-544

Literature search

13 open access papers mention hsa-mir-544b
(30 sentences)

Stem-loop

     a         -       g    -  uu    uag u 
5' gg auuuuguua aaaugca aauc ca  ucug   c c
   || ||||||||| ||||||| |||| ||  ||||   | u
3' cc ugaaacaau uuuacgu uugg gu  agau   g g
     g         c       g    a  cc    -ca a 

Deep sequencing

269 reads, 1.92 reads per million, 52 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr3: 124732439-124732516 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000355778 ; HEG1-003; exon 3

  OTTHUMT00000355732 ; HEG1-001; exon 6

  ENST00000477536 ; HEG1-003; exon 3

  ENST00000311127 ; HEG1-001; exon 6

Database links

• EntrezGene:MIR544B
• HGNC:MIR544B
• RNAcentral:URS000075E1F0_9606
• miRBase Tracker:MI0014159

Mature sequence hsa-miR-544b

• Accession: MIMAT0015004
• Sequence: 48 - accugagguugugcauuucuaa - 69
• Deep sequencing: 99 reads, 22 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000EE7F0_9606
• Predicted targets:
  • TargetMiner:hsa-miR-544b
  • TargetScanVert:hsa-miR-544b
  • miRDB:hsa-miR-544b
  • microrna.org:hsa-miR-544b

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).