Stem-loop sequence hsa-mir-1273c

Accession

MI0014171 (change log)

Symbol

HGNC:MIR1273C

Description

Homo sapiens miR-1273c stem-loop

Gene family

MIPF0001481; mir-1273c

Literature search

6 open access papers mention hsa-mir-1273c
(34 sentences)

Stem-loop

   ug    c         a        c       uuuu 
5'   cagc ugggcgaca aacgagac cugucuu    u
     |||| ||||||||| |||||||| |||||||    u
3'   gucg acccguugu uugcucug gacagag    u
   ag    a         c        a       ucuu 

Deep sequencing

1587 reads, 12.9 reads per million, 147 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr6: 154853360-154853436 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR1273C
• HGNC:MIR1273C
• RNAcentral:URS000075D0DC_9606
• miRBase Tracker:MI0014171

Mature sequence hsa-miR-1273c

• Accession: MIMAT0015017
• Sequence: 10 - ggcgacaaaacgagacccuguc - 31
• Deep sequencing: 579 reads, 99 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS000058878F_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1273c
  • TargetScanVert:hsa-miR-1273c
  • miRDB:hsa-miR-1273c
  • microrna.org:hsa-miR-1273c

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).