Stem-loop sequence hsa-mir-3150a

Accession

MI0014177 (change log)

Previous IDs

hsa-mir-3150

Symbol

HGNC:MIR3150A

Description

Homo sapiens miR-3150a stem-loop

Gene family

MIPF0001102; mir-3150

Literature search

1 open access papers mention hsa-mir-3150a
(3 sentences)

Stem-loop

                       c            a c  a 
5' gggaagcaggccaaccucga gaucuccucagc c ug a
   |||||||||||||||||||| |||||||||||| | || c
3' ccuuucguccgguuggagcu cuagaggggucg g ac g
                       c            - a  c 

Deep sequencing

392 reads, 24.6 reads per million, 57 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr8: 95072914-95072993 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-3150a

• hsa-mir-3150b: chr8: 95072911-95072996 [-]
• hsa-mir-3150a: chr8: 95072914-95072993 [+]

Database links

• EntrezGene:MIR3150
• HGNC:MIR3150A
• RNAcentral:URS000075C3A0_9606
• miRBase Tracker:MI0014177

Mature sequence hsa-miR-3150a-5p

• Accession: MIMAT0019206
• Sequence: 12 - caaccucgacgaucuccucagc - 33
• Deep sequencing: 212 reads, 39 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetMiner:hsa-miR-3150a-5p
  • TargetScanVert:hsa-miR-3150a-5p
  • miRDB:hsa-miR-3150a-5p

Mature sequence hsa-miR-3150a-3p

• Accession: MIMAT0015023
• Previous IDs: hsa-miR-3150
• Sequence: 49 - cuggggagauccucgagguugg - 70
• Deep sequencing: 179 reads, 42 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS000014F13C_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3150a-3p
  • TargetScanVert:hsa-miR-3150a-3p
  • miRDB:hsa-miR-3150a-3p
  • microrna.org:hsa-miR-3150a-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).