Stem-loop sequence hsa-mir-3156-1

Accession

MI0014184 (change log)

Symbol

HGNC:MIR3156-1

Description

Homo sapiens miR-3156-1 stem-loop

Gene family

MIPF0000891; mir-3156

Literature search

3 open access papers mention hsa-mir-3156-1
(9 sentences)

Stem-loop

        -                     a    uuuac 
5' gcaga agaaagaucuggaagugggag cacu     u
   ||||| ||||||||||||||||||||| ||||      
3' ugucu ucuuucuagaccuucacccuc guga     a
        c                     g    uauau 

Deep sequencing

103 reads, 0 reads per million, 34 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr10: 45164014-45164088 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR3156-1
• HGNC:MIR3156-1
• RNAcentral:URS000075B4BC_9606
• miRBase Tracker:MI0014184

Mature sequence hsa-miR-3156-5p

• Accession: MIMAT0015030
• Previous IDs: hsa-miR-3156
• Sequence: 8 - aaagaucuggaagugggagaca - 29
• Deep sequencing: 237 reads, 18 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS0000064063_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3156-5p
  • TargetScanVert:hsa-miR-3156-5p
  • miRDB:hsa-miR-3156-5p
  • microrna.org:hsa-miR-3156-5p

Mature sequence hsa-miR-3156-3p

• Accession: MIMAT0019209
• Sequence: 49 - cucccacuuccagaucuuucu - 69
• Deep sequencing: 48 reads, 19 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetMiner:hsa-miR-3156-3p
  • TargetScanVert:hsa-miR-3156-3p
  • miRDB:hsa-miR-3156-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).