Stem-loop sequence hsa-mir-3157

Accession

MI0014185 (change log)

Symbol

HGNC:MIR3157

Description

Homo sapiens miR-3157 stem-loop

Literature search

3 open access papers mention hsa-mir-3157
(3 sentences)

Stem-loop

                  c       u      ugcu ug g   a 
5' gggaagggcuucagc aggcuag gcaguc    u  u cca c
   ||||||||||||||| ||||||| ||||||    |  | |||  
3' cccuuuucgaagucg ucugauc cgucag    a  g ggu a
                  a       c      ---u gu g   c 

Deep sequencing

1030 reads, 0 reads per million, 100 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr10: 96064315-96064399 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000049469 ; PLCE1-001; 3'UTR (exon 24)

  OTTHUMT00000049470 ; PLCE1-002; 3'UTR (exon 24)

  ENST00000371380 ; PLCE1-001; 3'UTR (exon 24)

  ENST00000371375 ; PLCE1-002; 3'UTR (exon 24)

  ENST00000371385 ; PLCE1-202; 3'UTR (exon 24)

  ENST00000260766 ; PLCE1-201; 3'UTR (exon 25)

Database links

• EntrezGene:MIR3157
• HGNC:MIR3157
• RNAcentral:URS000075CBE4_9606
• miRBase Tracker:MI0014185

Mature sequence hsa-miR-3157-5p

• Accession: MIMAT0015031
• Previous IDs: hsa-miR-3157
• Sequence: 10 - uucagccaggcuagugcagucu - 31
• Deep sequencing: 905 reads, 84 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS00000D5FFC_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3157-5p
  • TargetScanVert:hsa-miR-3157-5p
  • miRDB:hsa-miR-3157-5p
  • microrna.org:hsa-miR-3157-5p

Mature sequence hsa-miR-3157-3p

• Accession: MIMAT0019210
• Sequence: 58 - cugcccuagucuagcugaagcu - 79
• Deep sequencing: 121 reads, 51 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetMiner:hsa-miR-3157-3p
  • TargetScanVert:hsa-miR-3157-3p
  • miRDB:hsa-miR-3157-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).