Stem-loop sequence hsa-mir-3158-1

Accession

MI0014186 (change log)

Symbol

HGNC:MIR3158-1

Description

Homo sapiens miR-3158-1 stem-loop

Gene family

MIPF0001065; mir-3158

Stem-loop

                                     ---   u 
5' auucaggccgguccugcagagaggaagcccuucu   gcu a
   ||||||||||||||||||||||||||||||||||   |||  
3' uaaguccggccaggacgucucuccuucgggaagg   ugg c
                                     uua   a 

Deep sequencing

4212 reads, 2.94 reads per million, 136 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr10: 101601417-101601497 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000049825 ; ABCC2-001; intron 25

  ENST00000370449 ; ABCC2-001; intron 25

Clustered miRNAs

< 10kb from hsa-mir-3158-1

• hsa-mir-3158-1: chr10: 101601417-101601497 [+]
• hsa-mir-3158-2: chr10: 101601417-101601497 [-]

Database links

• EntrezGene:MIR3158-1
• HGNC:MIR3158-1
• RNAcentral:URS000075F122_9606
• miRBase Tracker:MI0014186

Mature sequence hsa-miR-3158-5p

• Accession: MIMAT0019211
• Sequence: 13 - ccugcagagaggaagcccuuc - 33
• Deep sequencing: 813 reads, 64 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-3158-5p
  • TargetScanVert:hsa-miR-3158-5p
  • miRDB:hsa-miR-3158-5p

Mature sequence hsa-miR-3158-3p

• Accession: MIMAT0015032
• Previous IDs: hsa-miR-3158
• Sequence: 50 - aagggcuuccucucugcaggac - 71
• Deep sequencing: 7575 reads, 133 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS000040D577_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3158-3p
  • TargetScanVert:hsa-miR-3158-3p
  • miRDB:hsa-miR-3158-3p
  • microrna.org:hsa-miR-3158-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
3. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).