Stem-loop sequence hsa-mir-1260b

Accession

MI0014197 (change log)

Symbol

HGNC:MIR1260B

Description

Homo sapiens miR-1260b stem-loop

Gene family

MIPF0001381; mir-1260b

Literature search

34 open access papers mention hsa-mir-1260b
(73 sentences)

Stem-loop

   u u    uua       --    c         ug   cuguu    a 
5'  c ccgu   ucccacc  acug caccauuau  cua     cagc g
    | ||||   |||||||  |||| |||||||||  |||     ||||  
3'  g ggcg   ggggugg  ugau gugguagug  ggu     gucg g
   g u    ---       uc    a         gu   ----c    u 

Deep sequencing

215169 reads, 913 reads per million, 160 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr11: 96341438-96341526 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR1260B
• HGNC:MIR1260B
• RNAcentral:URS0000759BF7_9606
• miRBase Tracker:MI0014197

Mature sequence hsa-miR-1260b

• Accession: MIMAT0015041
• Sequence: 10 - aucccaccacugccaccau - 28
• Deep sequencing: 215149 reads, 158 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000239117_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1260b
  • TargetScanVert:hsa-miR-1260b
  • miRDB:hsa-miR-1260b
  • microrna.org:hsa-miR-1260b

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).