Stem-loop sequence hsa-mir-548w

Accession

MI0014222 (change log)

Symbol

HGNC:MIR548W

Description

Homo sapiens miR-548w stem-loop

Gene family

MIPF0000317; mir-548

Literature search

41 open access papers mention hsa-mir-548w
(141 sentences)

Stem-loop

                    c  c  u       uuuca 
5' gguuggugcaaaaguaa ug gg uuuugcc     a
   ||||||||||||||||| || || |||||||      
3' cuaaccacguuuucauu ac cc aaaacgg     c
                    a  a  c       uaaua 

Deep sequencing

7703 reads, 3.23 reads per million, 155 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 26025237-26025310 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000133286 ; HS3ST4-001; intron 1

  OTTHUMT00000276993 ; HS3ST4-002; intron 1

  ENST00000331351 ; HS3ST4-001; intron 1

  ENST00000475436 ; HS3ST4-002; intron 1

Database links

• EntrezGene:MIR548W
• HGNC:MIR548W
• RNAcentral:URS000075E3DF_9606
• miRBase Tracker:MI0014222

Mature sequence hsa-miR-548w

• Accession: MIMAT0015060
• Sequence: 10 - aaaaguaacugcgguuuuugccu - 32
• Deep sequencing: 4938 reads, 152 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003A8BB2_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548w
  • TargetScanVert:hsa-miR-548w
  • miRDB:hsa-miR-548w
  • microrna.org:hsa-miR-548w

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).