miRBase entry: bmo-mir-3213

Stem-loop bmo-mir-3213


Accession
MI0014266
Description
Bombyx mori bmo-mir-3213 precursor miRNA


Sequence

5 reads, 1 reads per million, 3 experiments
aauugUACUACUUUACAGGGAAUGCUCAGCuuguuucuaaguaccgaaaucaguaaguugucguaggcagauuuuauaucuaggaaagcUGAUAUGACCGAGUGUUUGUUAGAAAaugcaauc
.((((((((((..(((.((..(((.(((((((..(((((.(((..((((((.......((((...)))))))))).))).)))))))))))))))..))..)))...).)))....)))))).

Structure
a      ----   - -UU   -A  GA   C       gu     a   cc      aguaagu    g 
 auugUA    CUA C   UAC  GG  AUG UCAGCuu  uucua gua  gaaauc       uguc  
 ||||||    ||| |   |||  ||  ||| |||||||  ||||| |||  ||||||       |||| u
 uaacgu    GAU G   GUG  CC  UAU AGUcgaa  aggau uau  uuuuag       acgg  
c      aAAA   U UUU   AG  AG   -       --     c   -a      -------    a 


Annotation confidence Not enough data
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Genome context
NW_004582459.1: 2521-2643 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3213
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3213-5p

Accession MIMAT0015392
Description Bombyx mori bmo-miR-3213-5p mature miRNA
Sequence 6 - UACUACUUUACAGGGAAUGCUCAGC - 30
Evidence experimental
SOLID [1]

Mature bmo-miR-3213-3p

Accession MIMAT0015393
Description Bombyx mori bmo-miR-3213-3p mature miRNA
Sequence 90 - UGAUAUGACCGAGUGUUUGUUAGAAA - 115
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415