miRBase entry: bmo-mir-3228

Stem-loop bmo-mir-3228


Accession
MI0014282
Description
Bombyx mori bmo-mir-3228 precursor miRNA

Literature search
1 open access papers mention bmo-mir-3228
(1 sentences)

Sequence

10 reads, 1 reads per million, 3 experiments
uauuugagcaccuuGAGAUCAAAUGUUGCUGUCCUUGGAucuugaaguucugaauuuucaagaucuucagauucguggcuucgagcugucauuacuugagauggaggaaucu
.....((...((((.(..(((((((..(((..((.(((((((.((((.(((((....)).))).))))))))))).)).....)))...)))...))))..).))))..)).

Structure
uauuu  gca    G GA    ---   -UU   ---GU  U       u    u   -  a 
     ga   ccuu A  UCAA   AUG   GCU     CC UGGAucu gaag ucu ga u
     ||   |||| |  ||||   |||   |||     || ||||||| |||| ||| ||  
     cu   ggag u  aguu   uac   cga     gg gcuuaga cuuc aga cu u
----u  -aa    g ag    cau   ugu   gcuuc  u       -    u   a  u 


Annotation confidence Not enough data
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Genome context
NW_004581785.1: 199374-199485 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3228
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3228

Accession MIMAT0015410
Description Bombyx mori bmo-miR-3228 mature miRNA
Sequence 15 - GAGAUCAAAUGUUGCUGUCCUUGGA - 39
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415