miRBase entry: bmo-mir-3245

Stem-loop bmo-mir-3245


Accession
MI0014300
Description
Bombyx mori bmo-mir-3245 precursor miRNA

Literature search
1 open access papers mention bmo-mir-3245
(1 sentences)

Sequence

5 reads, 1 reads per million, 1 experiments
gacgaagguguuguuccguuggugauggugaguccaguccagucgcgggaagaaacacuuuuccacuuuugugucacuuugguucacUAGUCACUUGGGAGACGUCCUGGga
.....(((((((.(((((..((((((((((((.((((....(.((((((((((.....)))))).....)))).)...))))))))))).)))))))))))))).)))....

Structure
gacga   -    g     uu     -       u    ucca u    -----      a 
     agg uguu uuccg  gguga uggugag ccag    g cgcg     ggaaga a
     ||| |||| |||||  ||||| ||||||| ||||    | ||||     |||||| c
     UCC GCAG AGGGU  UCACU AUcacuu gguu    c gugu     ccuuuu a
-agGG   U    -     --     G       -    -uca u    uuuca      c 


Annotation confidence Not enough data
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Genome context
NW_004581689.1: 1797493-1797604 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3245
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3245

Accession MIMAT0015427
Description Bombyx mori bmo-miR-3245 mature miRNA
Sequence 88 - UAGUCACUUGGGAGACGUCCUGG - 110
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415