Stem-loop sequence bmo-mir-3316

Accession MI0014374
Description Bombyx mori miR-3316 stem-loop
Stem-loop 
-   u -   c   u    c   -    -gc    gca   --      a    -----       ucu     u  g 
 cgg g cga agg acgg aau cagu   cgcg   ggg  gccggu gcuu     cagcugu   auugg gc g
 ||| | ||| ||| |||| ||| ||||   ||||   |||  |||||| ||||     |||||||   ||||| || g
 gcc c gcu ucu uguc uua gucg   gugu   ccu  uggucg uggg     guuggcg   ugacc ug a
u   u a   -   u    a   c    auu    --a   ag      g    agcuc       --u     u  a
Get sequence
Deep sequencing
3 reads, 2 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
scaffold2889: 206-348 [+]
intergenic

Mature sequence bmo-miR-3316

Accession MIMAT0015504
Sequence

119 -  

ugcauuacuguuucuucgacuccg

 - 142

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).