miRBase entry: bmo-mir-3333

Stem-loop bmo-mir-3333


Accession
MI0014391
Description
Bombyx mori bmo-mir-3333 precursor miRNA


Sequence

3796 reads, 250 reads per million, 3 experiments
auacagguaccgucCCGUUCGAGAAGCAAGACAAAGUGccagaugucaaaucgcgacggcaccgucaaaucgcgacccguguugccgugguaagaauucaaaaacuaacggauugguuucgaacagucacccgcccgg
...(.(((........((((((((..(((..(..(((....((..((..((((((.((((((.(((.......)))..)))))).))))))..))..))....)))...)..))).))))))))........))).).

Structure
aua a   accgucCC        AG   GA -AA   Gcca  ug  aa      a      -c   aa 
   c ggu        GUUCGAGA  CAA  C   AGU    ga  uc  aucgcg cggcac  guc  a
   | |||        ||||||||  |||  |   |||    ||  ||  |||||| ||||||  |||  u
   g ccg        caagcuuu  guu  g   uca    cu  ag  uggugc guugug  cag  c
--g c   cccacuga        -g   ag caa   aaaa  ua  aa      c      cc   cg 


Annotation confidence Not enough data
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Genome context
NW_004620538.1: 760-897 [+]

Database links

Mature bmo-miR-3333

Accession MIMAT0015520
Description Bombyx mori bmo-miR-3333 mature miRNA
Sequence 15 - CCGUUCGAGAAGCAAGACAAAGUG - 38
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415