Stem-loop sequence bmo-mir-2733a-3

Accession

MI0014453

Description

Bombyx mori miR-2733a-3 stem-loop

Gene family

MIPF0000766; mir-2733

Stem-loop

gu       -  gaaa  uc     -     u ca           g        ucaucucaucacgcc  cau 
  ugauaug ug    au  uauca cuggg g  ugaugauugug uagagaga               gc   c
  ||||||| ||    ||  ||||| ||||| |  ||||||||||| ||||||||               ||    
  acuauau ac    ug  auagu gacuc c  acuacugacau aucucucu               ug   a
-c       u  aaug  -u     u     u ac           a        uuaucuucucuacaa  uac 

Genome context

• Coordinates (SILKDB2.0): nscaf2176: 345068-345215 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-2733a-3

• bmo-mir-9d: nscaf2176: 353029-353113 [-]
• bmo-mir-2733c: nscaf2176: 352194-352275 [-]
• bmo-mir-2733g: nscaf2176: 346317-346428 [-]
• bmo-mir-2733a-1: nscaf2176: 346147-346230 [-]
• bmo-mir-2851-1: nscaf2176: 346140-346238 [+]
• bmo-mir-2733b-2: nscaf2176: 345690-345818 [-]
• bmo-mir-2733h: nscaf2176: 345532-345612 [-]
• bmo-mir-2733b-1: nscaf2176: 345409-345488 [-]
• bmo-mir-2733a-3: nscaf2176: 345068-345215 [-]
• bmo-mir-2851-2: nscaf2176: 345032-345130 [+]
• bmo-mir-2733a-2: nscaf2176: 344959-345075 [-]
• bmo-mir-2733f: nscaf2176: 344550-344667 [-]
• bmo-mir-2733i: nscaf2176: 343361-343468 [-]
• bmo-mir-2733e-1: nscaf2176: 341366-341463 [-]
• bmo-mir-2733e-2: nscaf2176: 341036-341134 [-]

Mature sequence bmo-miR-2733a-5p

• Accession: MIMAT0012611
• Previous IDs: bmo-miR-2733a
• Sequence: 22 - ucacugggugcaugaugauugu - 43
• Deep sequencing: 6 reads, 2 experiments
• Evidence: experimental; SOLID [1]

Mature sequence bmo-miR-2733a-3p

• Accession: MIMAT0015593
• Previous IDs: bmo-miR-2733a*
• Sequence: 108 - agucaucacacucucaguugaua - 130
• Evidence: experimental; SOLID [1]

References

1. PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).